Mark Keller
Mark Keller
This PR adds the `demos/` directory, which is the next iteration of the `vitessce-data` repository. Each subdirectory of `demos` contains a snakemake workflow to produce the vitessce-compatible files (e.g., AnnData-Zarr...
See discussion at #188 - we could make it much easier to use single-channel TIFFs and OME-NGFF zarr stores in `vitessce`-python by adding wrapper classes for them, rather than forcing...
In https://github.com/vitessce/vitessce-python/blob/main/vitessce/_version.py specify a maximum schema_version value. Perhaps warn in the constructor but error in the `.widget()` function? It is possible that a user just wants to construct a config...
Fixes #181 I must have forgotten to update these two notebooks after we changed the parameter ordering for `add_view` a while back
In `vitessce/_version.py` read the version from `js/package.json`. Bump the current version in package.json to be greater than `max(current pypi, current npm)` Update the Deployment section of README.md to note that...
**User story** Want current code to stay compatible under future library versions. In order to identify the behavior that users are expecting, we need to know the view config schema...
As we are doing in the R package for bioconductor submission, it may be easier to maintain a core package separately from an extension package which deals with the specifics...
See https://www.biorxiv.org/content/10.1101/2021.07.28.454201v1 for kidney atlas data
Currently, when using the widget via proxy (by running `vc.widget(proxy=True)`), the `url` field of each file definition is updated so that includes the absolute URL of the remote server ([code...