Julien Cohen-Adad

ha! ~~~ (csa) [jcohen@gra-login1 ~]$ datalad install https://github.com/CONP-PCNO/conp-dataset.git [INFO ] Cloning https://github.com/CONP-PCNO/conp-dataset.git to '/home/jcohen/conp-dataset' [WARNING] It is highly recommended to configure git first (set both user.name and user.email) before using...

Hum, i only see this the 6.2 version of git-annex on the [compute canada list of software](https://docs.computecanada.ca/wiki/Available_software)

in general (not specific to compute canada), we should probably add the requirements (git-annex version) for external people to be able to download our datasets

i've tried the solution above, but ran into issues. Full details ~~~ [jcohen@gra-login1 ~]$ git clone --depth 1 git://git-annex.branchable.com/ git-annex Cloning into 'git-annex'... remote: Enumerating objects: 15675, done. remote: Counting...

I'm trying now to install git-annex v8 via conda: ~~~ wget -O/tmp/Miniconda3-latest-Linux-x86_64.sh https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh bash /tmp/Miniconda3-latest-Linux-x86_64.sh -b -f . ~/miniconda3/bin/activate conda install -y -c conda-forge git-annex ~~~ worked like a charm...

@valosekj regarding: oxfordFmrib01 can you remove it pls? this issue is only about data quality. we will deal with processing problems in other issues

> sub-stanford01_dwi_moco_dwi_mean.nii.gz - caused by bad SC segmentation for 3 caudal slices (ROI for QC is cropped based on SC segmentation) - will be manually corrected @valosekj that's a processing-related...

that is a great suggestion, thank you @bpinsard !

@mathieuboudreau Alex mentioned that you worked on implementing Eva's code into Python-- so I'm tagging you here to make sure we don't duplicate efforts

Thank you @noneedanick 🙏 ! It did fix the issue. I'll keep the issue open so the developers can consider improving the installation workflow.