Julien Cohen-Adad

> This discrepancy probably originates from [processing](https://github.com/spine-generic/spine-generic/blob/c8c8408715f101414ca08c6bcf29a5d5b87df90a/process_data.sh#L177-L183), where T2w image was resampled and then segmented: Yup! This is exactly it. Thank you for catching that @valosekj 🙏 Not sure what...

Hi @etetteh, thank you for reaching out. The analysis you ran does perform some segmentations (e.g., of the spinal cord on multiple contrasts, and of the spinal cord gray matter...

Hi, I suspect you only downloaded the symlinks, not the actual data, what is the output of: ~~~ ls -la sub-barcelona01_T1w.nii.gz ~~~ If the file name is only ~100Bytes then...

first thing i notice is that: ~~~ git annex get /sub-oxfordFmrib01/ ~~~ Putting a "/" before the folder name means, in UNIX convention, that you are fetching the root "/",...

@alexfoias and/or @kousu can you pls help @claragiroux -- thanks

@kousu it is not the first time (and thus not the last time) that users fail to verify their git-annex version. I suggest to slightly modify the doc, to make...

@kousu many researchers have Ubuntu 18.04. Isn't there an "easy" way to get git-annex v8 on this distro?

> The workaround is conda install -y -c conda-forge git-annex && ln -s PATH/TO/CONDA/bin/git-annex ~/.local/bin/. But that's definitely a workaround. great, thank you. Just for the context: many academic labs...

> If our acq-b0 files are really fieldmaps no they are not. It is quite confusing. These are not B0 fieldmap (where B0 refers to the static magnetic field) but...

> Single-Band Reference no it's not that (for the record: SB reference refers to images acquired with [SMS](https://pubmed.ncbi.nlm.nih.gov/26308571/) factor of >1) > But maybe it's fine like it is. i...