james hadfield

Tip labels are SVG text, which would be my guess at why they're not inverted.

Auspice has a few date functions in https://github.com/nextstrain/auspice/blob/master/src/util/dateHelpers.js which should help here

> Would it be helpful for me to mock up what the workflow would look like based on what I described above? Maybe, or is it not worth it and...

I think there's short answers and long answers. Short term we could use some heuristic to filter other datasets in that group down to a meaningful set (e.g. the options...

> Keep augur export v1 as a custom script in this repo to continue using it in the workflow. I think this would be minimal work - `export_v1.py` imports a...

> duplicate sequences can appear in the virus table when strain names get renamed in GISAID and later reingested with the same isolate id This can also happen if we...

> Another example issue with augur clades annotations that appeared recently in our 6-month trees is when older clades have died out and their clade-defining mutations reappear in new clades,...

Comment from #1044 (@neavemj) perhaps with a better explanation of this issue :) Hello and thanks for the great software! I'm just having an issue with 404 errors when changing...

> I think I've managed to make augur translate output the new complex CDS annotation - at least when one gives a genbank file as annotation in https://github.com/nextstrain/augur/pull/1333. Nice! >...

Thanks for the detailed bug report! The live site is working fine (e.g. https://nextstrain.org/zika?l=radial, Firefox) so I suspect it's something related to this specific dataset. I'll take a look next...