james hadfield

See https://github.com/nextstrain/auspice/pull/1668 for an alternative solution

Great suggestions -- I think that Auspice PR needs more testing & feedback before we use it, but I think it's ultimately a better direction than swapping back in the...

It'd be great to have `jq` available in our environments. For me it's use is severely limited by [its inability to parse large trees](https://stackoverflow.com/questions/75524357/how-to-increase-depth-limit-of-jq). As a tool specifically for "testing...

The optional annotations block (top level key `"annotations"` within a node-data object) [has a schema](https://github.com/nextstrain/augur/blob/master/augur/data/schema-annotations.json)

Gene names really shouldn't have spaces in them as per general guidelines, > [Symbols contain only uppercase Latin letters and Arabic numerals, and punctuation is avoided, with an exception for...

See also https://github.com/nextstrain/augur/pull/955

Having worked in fauna for the first time in a few years, this decoupling would be much welcome. For the work I was doing in avian flu (no titers!) I'd...

Yes the way Nextclade and augur process GFFs differ. Ivan's done a lot of good work on the nextclade side and we've had a bunch of discussions about how to...

> Is y focus useful without x focus? Yes. Using your terminology I'm not sure that x _focus_ will be a good idea, but I think there's a good _zoom_...

As of 377b4dc7, inlined root-sequence data will be validated, but the sidecar is still not validated