DV Klopfenstein, PhD

Thank you for your interest in GOA Tools and for giving your time to write this issue. Download the annotations before reading using wget: ``` $ wget http://geneontology.org/ontology/go-basic.obo $ wget...

Thank you very much for the error detail and the name and location of the annotation file. This is extremely helpful. Likely, we need to update the ECO codes. This...

Very nice. Thank you so much for the additional information regarding downloading the ECO codes to be used by GOA Tools. Your idea works well for GOA Tools as our...

I agree. Your question about the recommended gene population background for gene ontology enrichment analyses is a fantastic question -- one we just faced ourselves while analyzing a single cell...

One more note: You may be wondering why we used a pval of 0.05 for the GOEA analyse rather than the pval of 0.01 that we used on the scRNA...

Changing the background population genes will most likely result in different pvalues than if using the original background population genes. This is correct behavior. If the background population genes are...

Hello, Thank you for your interest in GOA Tools and for your time to contact us. Thank you for the detailed description of the issue you are encountering and for...

@scbarrera , Thank you so much for your interest in *pmidcite* and for taking your time to offer this amazing suggestion. Yes! This is a terrific idea. You can make...

Fantastic idea! We already have that functionality in a script (src/bin/dnld_pmids.py), but LOVE this idea to add it to the command line. I'll work on it and get back to...

FYI: Below is what I see when running: ``` $ python3 -m pytest tests -vv -cov genanki ``` The results match the summary shown on https://github.com/kerrickstaley/genanki/pull/144#issue-2534795533 ``` collected 58 items...