DV Klopfenstein, PhD

@cmungall We will definitely add using the gene ontologies from a JSON representation. This is great news and should make the runs faster. Do you know when the Gene Ontology...

Thanks @cmungall . Yes, the external dependencies would be an issue for our users. We are very much looking forward to using the json files. Please let us know if...

FYI: **Our speed tests show that reading GO DAGs from a JSON format is 287% faster than reading ASCII text from an obo file.** We ran the tests using the...

Hello @SirSharpest , Returning a networkx graph object containing significant GO terms is a great idea. Rather than using the OboToGoDagSmall, which only accounts for connections up the *is_a* relationship,...

Thank you for your interest in GOA TOOLS and for taking your time to alert us to this issue.

@olgabot, can you help with this issue? I am not familiar with the Conda installation for GOA TOOLS and am working a couple other issues right now. @genignored , can...

@genignored, Thank you so much. What version of GOA TOOLS is installed using conda?

Thank you for your interest in GOA TOOLS and for taking the time to write us. Yes! you can get the ancestors through either through *is_a* and optional relationships. See...

Thank you for the clarification. I am about to work on #184 and this question might also fold in nicely to that work. I will investigate further your question when...

Thanks for the offer to help. Trying the new functionality out and commenting on the to-be-added notebook would be very helpful. What is the usage case for your need for...