DV Klopfenstein, PhD

Great. Sounds good. Thank you for the feedback. This request sounds extremely useful.

Thank you for your interest in GOATOOLS and taking your time to write us. The paths_to_top function was created in 2013 before the obo_parser could handle optional relationships. I believe...

Thank you for opening this issue. I will take a look at this shortly.

Thank you. I am using this code in my PhD thesis, and have it fixed in beta repo, but need to move the fix over to the GOATOOLs production code....

Thank you for opening this issue. I am taking a look at it now. Which association file did you use?

Lin similarity scores were showing up as greater than 1.0 if one or both of the GOs in the pair are not annotated. In the example you provided, GO:0101002 (boxed...

Hello @serbulent , Having an option to assigning a small value to user-requested unannotated GO terms is a great idea. This will not be the default, but will be available...

Thank you for opening this issue and thank you for your interest in GOATOOLS. I will take a look at this shortly.

Dr. Loher, Thank you taking the time to write to us regarding this. We have another open issue with the same question regarding large differences between uncorrected P-values and the...

Yes. Sending sample-code and test input via email would be very helpful. Please see my GitHub home page for my email. It will be interesting to explore the large uncorrected/corrected...