Arno Klein

great! if you look at the propagate() function in segment.py, you'll see that it calls rebound.py, and uses a simple weighted average algorithm for label propagation to resolve label boundaries...

in the trivial case of a two-label problem, establishing which vertices have one label automatically solves for the other label, but how would one know what label should flank a...

i follow you exactly. you're on the mark. i would much prefer to propagate between fundus curves that define label boundaries without having to explicitly flank the curves with labels...

This makes perfect sense to me -- #5 and #6 must be conquered! I would really like to see #3! Could you please attach an image. Regardless of what we...

@akeshavan -- How do you process FreeSurfer longitudinal data with Mindboggle?

@donghm -- Has @akeshavan helped elucidate/resolve your error? Please respond, as this will help others who run into a similar issue in the future.

TO DO -- use nilearn's plot_surf: https://nilearn.github.io/modules/generated/nilearn.plotting.plot_surf.html#nilearn.plotting.plot_surf

I tried nilearn's plot_surf (https://nilearn.github.io/modules/generated/nilearn.plotting.plot_surf.html#nilearn.plotting.plot_surf) on mindboggle data: ``` import numpy as np depths_array = np.asarray(depths) fs_surf_mesh = subject_path + 'surf/lh.pial' nilearn.plotting.plot_surf(surf_mesh=fs_surf_mesh, surf_map=depths_array, bg_map=None, hemi='left', view='lateral', cmap=None, colorbar=True, avg_method='mean', threshold=None,...

Wow, nice workaround, @PeerHerholz!

Sounds good! Cheers, @rno Arno Klein, PhD MATTER Lab Director Joseph Healey Scholar Senior Research Scientist Child Mind Institute 101 E 56 St, NY, NY matter.childmind.org 347-577-2091 ________________________________ From: Peer...