Arno Klein

When do you suggest I import nipype, or should I wait for your change in nipype?

@satra -- Why would I get a doctest error when the command in question is returning something (area_file)? > Failed example: > area_file = area(command, surface_file, verbose) > Expected nothing...

@satra -- I moved nipype installation to earlier in the conda install line of neurodocker.sh, but circleci tests are still failing: > FAIL: Doctest: mindboggle.shapes.surface_shapes.area > ---------------------------------------------------------------------- > Traceback (most...

By "dummy line after that doctest", do you mean an empty line ">>> " after the line: `area_file = area(command, surface_file, verbose)` or after the last line of the docstring?

@bcipolli -- So that I'm clear, do you believe that the decimation function is saving the files in a format not compatible with three.js, and that reading/rewriting (with explode_scalars() or...

Perhaps writing out the vtk file using vtk.vtkPolyDataWriter() in the decimate() function might not be the way to go. I'm not sure what to replace it with, but given that...

I agree. Which global measures would you like to include in the mindboggled output? By the way, this issue is related to issue #108.

After running recon-all I see the following in a subject's stats/ folder: > aseg.stats > lh.aparc.a2009s.stats > lh.aparc.DKTatlas.stats > lh.aparc.pial.stats > lh.aparc.stats > lh.BA_exvivo.stats > lh.BA_exvivo.thresh.stats > lh.curv.stats > lh.w-g.pct.stats...

Why do I have a syntax error?: ``` asegstats2table --subjects bert File "/Applications/freesurfer/bin/asegstats2table", line 195 print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' SyntaxError: invalid syntax ``` And why...

I won't be able to get to a pandas parsing for some time, unfortunately...