enrichplot

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Recently, the ontology check was introduced to `goplot`, but there was a typo where `BP` was incorrectly specified as `BF`. This was subsequently fixed in the message, but not in...

davorvr

how many geneIDsets can be plot at maximum using gseaplot2?

2

deg

dksldjlskdfjlsdkf

Inclusion and exclusion criteria used by dotplot

10

Hi, I encountered an issue where some pathways that were passed the significant cutoffs (adjusted p

xinming-an

Because p-values are often more symmetrically distributed on a log scale, the current color scale leads to many instances of plots where the highest p-value is orders of magnitude larger...

ThomasKAtkins

cnetplot error: Problem while computing aesthetics. Error occurred in the 5th layer.

1

Hi, I got an error when using `cnetplot` ```r # plot hallmark pathways > cnetplot(ora.H) Error: ! Problem while computing aesthetics. ℹ Error occurred in the 5th layer. Caused by...

YiweiNiu

emapplot 'x' must be an array of at least two dimensions

1

Hello, I am trying to use emapplot and get the following error: ``` emapplot(GO_CC_down) + labs(title="Enrichment map for GO CC down") + theme(plot.title=element_text(hjust=0.5,size=15,face="bold")) Error in rowSums(data[, cols]) : 'x' must...

asmariyaz23

Text label size on emmaplot

2

I am running a emmaplot on a on gseGO object. How can I change the size of text labels for each of the categories? I coudn't see any built-in options....

fmarinn

Dotplot and barplot shows (Error in ans[ypos] <- rep(yes, length.out = len)[ypos] ) and a warning message, even though the enrichResult is not emplty

1

I ran the general pipeline with entrez_ids from my DEG analysis ``` gene_list % filter(avg_log2FC >= 0.4) %>% pull(X) entrez_ids

Chanukya-Pavan

emapplot is empty even with different files that worked before and generated emapplot.

11

Hello, I updated enrichplot, clusterprofiler, dose, geosemsim and installed ggtangle, however, all the emapplots are empty. ``` library(clusterProfiler) library(enrichplot) library(tidyverse) library(org.Hs.eg.db) #org.Rn.eg.db #org.Hs.eg.db library(RDAVIDWebService) library(ggplot2) library(pathview) library(rrvgo) library(GOSemSim) library(ggtangle) input_data

jalilsharif

unable to install enrichplot on new version of R

1

unable to install R on v4.4.2 due to ggtangle dependency which apparently is not available for this version. See error code below install(packages = "bioc::enrichplot") # Downloading packages ------------------------------------------------------- -...

msewell12