emapplot is empty even with different files that worked before and generated emapplot.

[jalilsharif]

Hello, I updated enrichplot, clusterprofiler, dose, geosemsim and installed ggtangle, however, all the emapplots are empty.

library(clusterProfiler)
library(enrichplot)
library(tidyverse)
library(org.Hs.eg.db) #org.Rn.eg.db #org.Hs.eg.db
library(RDAVIDWebService)
library(ggplot2)
library(pathview)
library(rrvgo)
library(GOSemSim)
library(ggtangle)




input_data <- read.csv("input.csv")
colnames(input_data)[1] <- "BACKGROUND"
background <- input_data$BACKGROUND
input_data$BACKGROUND <- NULL

cc_object <- compareCluster(geneCluster = input_data,
                    fun = "enrichGO",
                    OrgDb = organism,
                    keyType = "ENSEMBL",
                    minGSSize = 4,
                    maxGSSize = 400,
                    ont = "BP",
                    pAdjustMethod = "BH",
                    pvalueCutoff = 0.05,
                    qvalueCutoff = 0.01,
                    universe = background)

amended_cc_object <- pairwise_termsim(cc_object)   


set.seed(123456)

p1 <- emapplot(amended_cc_object,  layout = igraph::layout_with_fr, showCategory=30, node_label = "category",  group = FALSE,
               group_style = "ggforce",
               label_group_style = "shawdowtext",
               label_format = 30,
               clusterFunction = stats::kmeans,)

print(p1)

this is the code I use. I have used at least three datasets and emapplot is empty in all cases. It used to work on these before.