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emapplot 'x' must be an array of at least two dimensions
Hello,
I am trying to use emapplot and get the following error:
emapplot(GO_CC_down) + labs(title="Enrichment map for GO CC down") + theme(plot.title=element_text(hjust=0.5,size=15,face="bold"))
Error in rowSums(data[, cols]) :
'x' must be an array of at least two dimensions
Here is the object:
> GO_CC_down
#
# Result of Comparing 5 gene clusters
#
#.. @fun enrichGO
#.. @geneClusters List of 5
$ conc_0.1uM : chr(0)
$ conc_1uM : chr "RNVU1-29"
$ conc_10uM : chr(0)
$ conc_100uM : chr [1:56] "HECW1" "PDK2" "MRC2" "VCAN" ...
$ conc_1000uM: chr [1:21] "NKAIN4" "SLC2A9" "CDH6" "CEP70" ...
#...Result 'data.frame': 3 obs. of 13 variables:
$ Cluster : Factor w/ 5 levels "conc_0.1uM","conc_1uM",..: 4 4 4
$ ID : chr "GO:0016323" "GO:0009925" "GO:0045178"
$ Description : chr "basolateral plasma membrane" "basal plasma membrane" "basal part of cell"
$ GeneRatio : chr "5/46" "5/46" "5/46"
$ BgRatio : chr "264/19960" "298/19960" "317/19960"
$ RichFactor : num 0.0189 0.0168 0.0158
$ FoldEnrichment: num 8.22 7.28 6.84
$ zScore : num 5.67 5.25 5.04
$ pvalue : num 0.000343 0.000596 0.000787
$ p.adjust : num 0.0268 0.0268 0.0268
$ qvalue : num 0.0226 0.0226 0.0226
$ geneID : chr "ABCC3/SLC2A9/SLC7A7/AQP3/SLCO2A1" "ABCC3/SLC2A9/SLC7A7/AQP3/SLCO2A1" "ABCC3/SLC2A9/SLC7A7/AQP3/SLCO2A1"
$ Count : int 5 5 5
#.. number of enriched terms found for each gene cluster:
#.. conc_0.1uM: 0
#.. conc_1uM: 0
#.. conc_10uM: 0
#.. conc_100uM: 3
#.. conc_1000uM: 0
Could you help me understand why I am getting this error?
Thank you, Asma