Volker Hilsenstein
Volker Hilsenstein
Opening this issue to continue the discussion with @dmilkie from here: https://github.com/hammerlab/flowdec/issues/12 I don't think we'll get the deconv running in realtime even with `flowdec` it still takes a few...
when processing several stacks in an experiment, psf processing happens for every stack
For this particular dataset, the naive approach takes about 1s per image including read/write if I use this naive approach. I can see the GPU utilization going up and down...
Currently, we don't seem to have lattice pattern information in our PSF filenames. This seems to differ from other systems, e.g. the LLSpy documentation refers to a particular naming scheme...
embed scaling/unit information (pixel / mm in X,Y,Z) in tiff tags in a way that is understood by Fiji.
Not urgent, but relatively easy to add output format options for Big Data Viewer and Imaris hdf5 via https://github.com/tlambert03/imarispy (should be easy). Think about supporting adaptive particle representation as output...
Would be nice if one could run the notebooks in binder. However it appears there is no free binder option with GPU support. Google colab has GPU support but not...
code for finding centre of bead for creating the PSF is crude and is lacking subpixel fitting Look at something like this (extend to 3D) https://github.com/david-hoffman/gaussfitter or some of the...
time to start adopting some proper software engineering practices
### Describe the bug **context** When I build a book using builder `pdflatex`, and the book title contains and underscore `_` character, it appears that the underscore character doesn't get...