VolkerH
Support additional output formats Big Data Viewer, Imaris, .h5, Adaptive Particle Representation
Not urgent, but relatively easy to add output format options for Big Data Viewer and Imaris hdf5 via https://github.com/tlambert03/imarispy (should be easy).
Think about supporting adaptive particle representation as output to alleviate the storage problem https://github.com/AdaptiveParticles/LibAPR (no clue how difficult integration is, only heard about it yesterday).
Started experimenting with Adaptive Particle Representation.
Built a Docker container in which I have a python 3.5 instance with pyApr, scikit-image and ipython
https://github.com/VolkerH/MyDockerStuff/tree/master/my_libapr
Using ipython I interactively converted a lattice stack (previously converted to np.uint8) to APR and did a reconstruction to tiff from the APR. These are the different file sizes:
-rwxr-xr-x 1 root root 6407198 Feb 14 14:27 my_apr_apr.h5
-rwxr-xr-x 1 root root 35391959 Feb 14 14:20 reconstructed.tif
However, pyApr seems to use a different ordering of dimensions internally, it seems that Z was swapped with something. Need to try reordering input and output array dimenstions and try again.
