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Modular spatio-temporal models for epidemic and pandemic simulations

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For our Paper, some simulations for fictional and real scenarios should be performed using the age-resolved LCT-SECIR model.

prio::high
status::in progress
model::lct

### Motivation / Current Behaviour in the advance function of the secirvvs model, we always set ``` this->get_model().parameters.get_start_commuter_detection() = (ScalarType)t_start; this->get_model().parameters.get_end_commuter_detection() = (ScalarType)t_end; ``` Testing should not necessarily be coupled...

prio::low
loc::backend
model::ode
class::improvement

# Changes and Information Please **briefly list the changes** (main added features, changed items, or corrected bugs) made: - - - If need be, add additional information and what the...

### Motivation / Current Behaviour Currently it doesnt make a huge difference, if a lot of people are infectious for the runtime. But it should, as we do alot of...

good first issue
model::abm
class::improvement
class::performance

### Bug description When building python in editable mode a deprecation warning occurs. ### Version Linux ### To reproduce 1. go to any python package 2. 'pip install -e .'...

class::bug
loc::python interface

### Motivation / Current Behaviour A lot of code used to read data , e.g., `read_population_data`, is doubled in the parameters_io files for the ODE models. We should add documentation...

loc::backend
model::ode
class::improvement

### Motivation / Current Behaviour As part of issue #364, the World now has a serialize() and a deserialize() function. This, however, requires to implement these functions in its member...

prio::low
loc::backend
model::abm
class::improvement

### Bug description The current implementation of the stochastic compartment models can result in negative compartments. This is problematic for multiple reasons: 1. Negative Compartments do not make sense 2....

class::bug
loc::backend
model::sde

# Changes and Information Please **briefly list the changes** (main added features, changed items, or corrected bugs) made: - Add mobility rule so a person can go to hospital when...

# Changes and Information Please **briefly list the changes** (main added features, changed items, or corrected bugs) made: - - - If need be, add additional information and what the...