HelloWorldLTY comments

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                                            HelloWorldLTY

Does LLAVA have a logo？

I think so, the volcano is what you are looking for.

Some questions about raw spatial data

Hi, if possible, the more data you provide, the better I can push forward my project. Thanks a lot.

How to read seqfish file from raw folders

Thanks a lot, I will try it later!

Bugs when I do not intend to use PCA to infer in-silico perturbation

I see, thanks.

Bugs when I do not intend to use PCA to infer in-silico perturbation

Hi, sorry to disturb you again. I further intend to check my understanding of your implementation of in silico perturbation. I think the code here is used to compute the...

Performance on Xenium/Merfish(Vizgen) - Single cell integration

Hi, I believe using count based data for training is more acceptable, that is because 1. Since there are missing genes in the spatial data, we cannot directly normalize the...

Can we have an API as batch size for the integration method?

Hi, the spatial data are in 160,000+ cells. Single-cell data are in 30,000 cells.

Nice work, could we input our own co-expression network to this method? Thanks.

Hi, I have a co-expression network G and dataset D. I wonder if I can directly use the network G to perform hdWGCNA analysis. If you have simple solution, I...

Interests about python implementation

I see, thanks a lot. I have implemented propr by myself. Thx.

Interests about python implementation

Hi, I used to implement one python version, I can upload the code later. Thanks for your interests.