Can we have an API as batch size for the integration method?

Open HelloWorldLTY opened this issue 2 years ago • 3 comments

Hi, My dataset is very large, which cannot be handled by tangram, so I wonder if it is possible to have a key or api known as batch size to address this problem. Thanks a lot.

Aug 21 '23 21:08 HelloWorldLTY

Hey @HelloWorldLTY, currently there isn't a way to process batches. Could you let me know the dimensions of your dataset, both single cell and spatial. I will try to help you with a work around!

Best, Shreya

Sep 26 '23 17:09 gaddamshreya1

Hi, the spatial data are in 160,000+ cells. Single-cell data are in 30,000 cells.

Sep 26 '23 19:09 HelloWorldLTY

Hi @HelloWorldLTY ,

Thank you so much for your patience! Since your spatial data is super large, one thing you could is to split your spatial data to different part and then continue with you mapping. For example: If you have many tissue segments, you could map each segment separately.

Oct 30 '23 18:10 gaddamshreya1