HelloWorldLTY

Thanks, I have successfully reproduced your work for running totalcontrastiveVI and TotalVI, based on your contrastive-vi reproduce folder. I actually further have a question about running totalvi: https://github.com/suinleelab/contrastiveVI-reproducibility/blob/43efaab1990410179f0005ba8c6dd411cc8789a4/scripts/run_experiment.py#L356C1-L361C14 It seems...

Thanks a lot, it also works for my case :)

Is my requirement same as the multi-species training dataset? Thanks.

Same request here, it will be good if CellChat considers adding analysis pipeline for spatial data with single-cell resolution.

I have the same problem in the single node case.

Hi, many thanks for your reply! I just run the codes listed on the website. https://shbrief.github.io/GenomicSuperSignature/articles/Quickstart.html   But I can generate the next figure: 

Hi, thanks for your help. For the valid instruction, it returns true.  However, for the source code, I cannot run it. `'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for...

Thanks, it wll be a great enhancement.

Hi, there will be an error if I try: ``` File "", line 1, in File "/home/tl688/.conda/envs/evo/lib/python3.11/site-packages/openai/_utils/_utils.py", line 276, in wrapper raise TypeError(msg) TypeError: Missing required arguments; Expected either ('model'...

The error is the same: ``` File ~/.conda/envs/evo/lib/python3.11/site-packages/openai/_base_client.py:1012, in SyncAPIClient._request(self, cast_to, options, remaining_retries, stream, stream_cls) 1002 return self._retry_request( 1003 input_options, 1004 cast_to, (...) 1008 response_headers=None, 1009 ) 1011 log.debug("Raising connection...