QuickUMLS

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[BUG]Dependency conflicts of QuickUMLS install

1

**Describe the bug** Followed the instruction and had UMLS installed. The QuickUMLS repo was cloned to my local drive and I used "pip install quickumls" to install. However, it got...

bearnomore

__init__() got an unexpected keyword argument 'spacy_component'

7

**Describe the bug** When I run the following code: from quickumls.spacy_component import SpacyQuickUMLS nlp = spacy.load('en_core_web_sm') quickumls_component = SpacyQuickUMLS(nlp, '/home/silverock/umls/quickUMLS') nlp.add_pipe(quickumls_component) I got this message: --------------------------------------------------------------------------- TypeError Traceback (most recent...

eunsuk-c

[BUG] SSLError workarounds?

3

This seems to be a firewall related error, which has [known workarounds for standard PIP install](https://jhooq.com/pip-install-connection-error/). ```sh python -m quickumls.install . ~/repos/umls-files ``` Error: ``` python -m quickumls.install . ~/repos/umls-files...

DSLituiev

I am unable to return a cui for Chron's disease, chrons disease, or any variation thereof; I can get a cui for IBD1, regional enteritis, and other code descriptions that...

dimitri-kaid

Reducing RAM footprint + Adding preferred term output

3

The preferred term for every match is also returned (useful for normalizing terms in a text). The RAM footprint is reduced by removing the sets in which the terms are...

fschlatt

install quickUMLS

4

hello how are you, I tried to install this version with preferred term but i have this problem when installing it File "C:\Users\ouerf\anaconda4\lib\site-packages\setuptools\command\easy_install.py", line 1158, in run_setup run_setup(setup_script, args) File...

om35

Fresh QuickUMLS installation on Windows 10 returning empty [] - no errors

2

**Describe the bug** - running test script following fresh Windows installation returns [] **Environment ** - conda env with python 3.8.10, quickumls 1.4.0.post1, quickumls-simstring 1.1.5r2 - Windows 10 **Additional context**...

khankanz

**Describe the bug** The latest version is not up to date, given that the master code contains spacy_component . Can we create a new release so we can installed automatically...

I-Akrout

about `nlp.add_pipe` in the demo

7

**Describe the bug**  when i run the demo code，there something wrong about “nlp.add_pipe(quickumls_component)”， Traceback (most recent call last): File "umlsdemo.py", line 8, in nlp.add_pipe(quickumls_component) File "/home/mayt/anaconda3/envs/umls/lib/python3.7/site-packages/spacy/language.py", line 769, in...

newbietuan

Hi, I was wondering if it is somehow possible to also display the ICD-10 code that refers to the CUI code which was matched to the medical phrase. Thanks in...

bktllr