QuickUMLS

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[BUG] Issue with installing simstring

1

**Describe the bug** Simstring doesn't seem to install correctly. When installing quickUMLS, it seems the simstring module is empty with this error: `Traceback (most recent call last): File "install.py", line...

kr-hansen

Error while installing

7

The readme says that the installation specifically requires UMLS MRCONSO.RRF and MRSTY.RRF. I put these files separately in a new directory and provide it as an argument ``. When I...

vishaldeyiiest

[BUG] spacy component ValueError: "A token can only be part of one entity"

2

**Describe the bug** When QuickUMLS concept matches occur over the same token, Spacy reports an error like the **To Reproduce** Using QuickUMLS version 1.5 or higher, run the following sample....

burgersmoke

**Describe the bug** Multithread dead lock when destination path is other disk on mac os. unqlite.UnQLiteError: Another process or thread hold the requested lock Another process or thread have a...

createrfang

installation problem on windows 10

1

I am trying to install quickUMLS on my windows 10 desktop. I am able to follow the installation instructions on README.md up to Step 3, with a small tweak in...

yancylo

Using `doc.spans["sc"]` (SpanCategorizer) to solve the problem of overlapped tokens in nested NER for spacy. By replacing `doc.ents` with `doc.spans["sc"]`, all possible entities are able to be stored without any...

hungvo304ml

Hi team, **Describe the bug** I followed the installation instructions step 3: Create a QuickUMLS installation Initialize the system by running python -m quickumls.install . the command can be run...

skyrockets-21

[BUG]ValueError: [E090] Extension 'similarity' already exists on Span. To overwrite the existing extension, set `force=True` on `Span.set_extension`.

4

**Describe the bug** Hi, I use the example in the demo. I'm facing this error: ValueError: [E090] Extension 'similarity' already exists on Span. To overwrite the existing extension, set `force=True`...

nitzanbar29

Google colab support

1

I installed Quick UMLS on google colab, but I didn't find umls-simstring.db, even I hardly searched for it in the installed files but it's not there, how can I solve...

AzzedineAftiss

When starting QuickUMLS as a server it is not possible to give a list of accepted semtypes, as it is the case when instantiating a QuickUMLS object. Is it possible...

melindmi