QuickUMLS

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Hi, I don't have time to make a PR right now, this is just to let you know that simply excluding NER from the spacy pipeline results in approximately 2x...

ldorigo

**Describe the bug** (base) F:\QuickUMLS-master>python setup.py install D:\Anaconda3\lib\site-packages\setuptools\dist.py:487: UserWarning: Normalizing '1.4.0r1' to '1.4.0.post1' warnings.warn(tmpl.format(**locals())) running install running bdist_egg running egg_info writing quickumls.egg-info\PKG-INFO writing dependency_links to quickumls.egg-info\dependency_links.txt writing requirements to quickumls.egg-info\requires.txt...

xiaoshuang0918

fixes #74

1

Bug: The users choise of the best_match and ignore_syntax parameters is ignored, as it isn't passed down from the match function in core to the _match function. Fix: the parameters...

akleinau

**Describe the bug** The users choise of the best_match and ignore_syntax parameters is ignored, as it isn't parsed down from the match function in core to the _match function. **To...

akleinau

Installing takes too much memory

8

When running `python -m quickumls.install` on an MRCONSO.RRF file with about 7M rows, the memory footprint continuously grows and some point the process is killed because of using too much...

fschlatt

[BUG] Installation Error: Don't know how to compile leveldb for Windows!

2

I am on Windows 10 and I ran `pip install quickumls` but instead was faced with the below error for the installation of leveldb. I have searched up alternatives such...

gohjiayi

INSTALL problem

4

**Describe the bug** When doing an install with pip install quickumls I get the following error In file included from unqlite.c:22: In file included from /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:11: In file included from...

ranum

Hi, thanks for the great package. I think it would be useful to have a constructor message that specifies the spacy model string to load (instead of a generic `language`...

stephantul

[BUG] QuickUMLS initialization spacy.load error in Spacy 3.0

1

**Describe the bug** When I tried to initialize QuickUMLS as in the following example: ```` matcher = QuickUMLS(quickumls_fp, overlapping_criteria, threshold, similarity_name, window, accepted_semtypes) ```` I got the error below. This...

pokarats

Issue 60 spacy entity overlap

4

This is an initial fix for what @soldni and I have discussed with spacy and overlapping entity spans. We may want to add additional match data later in an extension...

burgersmoke