ols4
ols4 copied to clipboard
EBISPOT
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
Related to #935 This PR extends `ShortFormAnnotator.java` to handle ad-hoc namespaces in the OBO PURL space that take the form `http://purl.obolibrary.org/obo/#`, such as http://obolibrary.org/obo/mesh#C This PR will give more accurate...
Add examples for MCP server configuration for Cursor, Claude, VS code to the frontend MCP docs page
These should be config snippet(s) with a copy button
Hello, thanks for all the work you do with the ontologies. I am reporting the behaviour below as I found it affected some of my results. Kind regards! Describe the...
We obviously want to avoid the antipattern of MCP servers mimicking APIs and returning enormous payloads, but I think having some way to access really key term metadata such as...
CC @cmungall OLS is hosting not just ontologies but some "ontology-like" artefacts which are more like schemas. Examples: schema.org, biolink, mixs, new requests such as https://github.com/EBISPOT/ols4/issues/1038 They are biomedically useful...
I would like to request the addition of **Value Sets** ontology to **OLS**. Here is the supporting Excel sheet: [Valuesets.New.OLS.ontology.request.xlsx](https://github.com/user-attachments/files/23239320/Valuesets.New.OLS.ontology.request.xlsx) Thank you!
**New feature description.** The current exactMatch option in the V2 Search API allows for case-insensitive queries but remains sensitive to accents. For example, searching for: [https://www.ebi.ac.uk/ols4/api/v2/ontologies/ictv/classes?page=0&size=20&search=sabi%C3%A1%20virus&exactMatch=false&includeObsoleteEntities=true](https://www.ebi.ac.uk/ols4/api/v2/ontologies/ictv/classes?page=0&size=20&search=sabi%C3%A1%20virus&exactMatch=false&includeObsoleteEntities=true) returns the expected result...
**New feature description.** When using the general site-wide search tool, there is an option to filter based on ontology (checkbox), however, it would be very handy if one could filter...
## Add Detailed Instructions to MCP Tools ✅ - [x] Review current MCP tool descriptions in the codebase - [x] Enhance McpSearchService tool descriptions with detailed instructions - [x] Improve...
