ols4
ols4 copied to clipboard
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
**Describe the bug** In OLS3 the `select` and `search` APIs provides the possibility to search for an IRI and the first results is an exact match for the requested IRI...
https://www.ebi.ac.uk/ols4/ontologies/efo/properties/http%253A%252F%252Fwww.ebi.ac.uk%252Fefo%252Freason_for_obsolescence it says imported but it shouldn't, it's defined in EFO
**New feature description.** OLS currently does not have a way to display _how_ a search hit was established. In particular, the autocomplete field does not show the field where the...
**Describe the bug** I loaded the [Radiology Lexicon (RadLex) ontology](https://bioportal.bioontology.org/ontologies/RADLEX) to ols on a local machine. This ontology defines an own property `http://radlex.org/RID/Preferred_name` for the main label of an entity....
I fixed the issue https://github.com/EBISPOT/ols4/issues/853 by adding a line to the corresponding Java class [LabelAnnotator](https://github.com/EBISPOT/ols4/blob/dev/dataload/rdf2json/src/main/java/uk/ac/ebi/rdf2json/annotators/LabelAnnotator.java). As an test I indexed two ontologies. For RadLex I used the following line at...
**New feature description.** OLS displays the subsets that a class (like ['garden' ENVO:00000011](https://www.ebi.ac.uk/ols4/ontologies/envo/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FENVO_00000011)) is in (like ['NMDC Soil local scale value set' ENVO:03605014](https://www.ebi.ac.uk/ols4/ontologies/envo/properties/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FENVO_03605014?lang=en)) But the 'NMDC Soil local scale value...
Carriage returns are deleted/ignored in text. This can results in an ugly smushing together of content like this  --->  Could they instead be retained?
**New feature description.** For better or worse, subsets have been used for a variety of use cases (from defining upper levels in ontologies, to creating domain specific subsets, to external...
CC https://github.com/EVORA-project/ictv-ontology/issues/12
**Describe the bug** This term displays a linked image http://purl.obolibrary.org/obo/CL_1000334 But does not display the annotations on this image: **Expected behavior** It should display the annotations. Ideally using the standard...