daylily
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Daylily-Informatics
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....
Explore using rclone to mount /sample_data with which is an s3 bucket (or any remote really) that containst the sample data and manifest for analysis. This can be dynamicaly set...
Once v0.1 is ready, create AMIs for the head and compute nodes, which will be the default install pattern for daylily. Add logic to select between AMI and source install...
Break daylily into `daylily-ephemeral-cluster-manager` & `daylily-ephemeral-cluster-analysis` repos. `daylily-ephemeral-cluster-manager` will hold the logic and tools to manage creation of clusters. By pip installable. `daylily-ephemeral-cluster-analysis` will hold the cluster analysis aspects of...
Consider putting a check at boot time for all project tags to check if present in AWS. Also, consdier allowing null comment for unbudgeted projects.
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A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....