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Published 20 hours ago • verified publisher icon Daylily-Informatics
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Metadata

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....

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Explore user pays analysis workflow

- possible?

iamh2o avatar iamh2o

v0.8

Document Cloud Monitoring Dashboard

- Minimally, document its existence.

iamh2o avatar iamh2o

v0.7

Debug budgeting feature

- Most of this is working, but needs to be fine tuned.

iamh2o avatar iamh2o

v0.7

Plug in sentieon

- The code is already there for bwa and dnascope. Obtain lic and run analysis.

iamh2o avatar iamh2o

new-feature
v0.7

Complete strobelighner analysis

- run and write up analysis.

iamh2o avatar iamh2o

v0.7

Write up strobealigner analysis results

- run strobealigner on giab with v0.7, write up.

iamh2o avatar iamh2o

v0.7

Create v0.7 release

# Objective Create a new release for v0.7 & announce. # Tasks - [ ] Delete all unused code/docs. - [ ] Update the README.md file. - [ ] Draft...

iamh2o avatar iamh2o

v0.7

Finalize the v0.7 release

# Objective - Finalize and announce the `v0.7` release of daylily. # Tasks - [ ] Scrub all extraneous `smk` files from the repository. - [ ] Take a pass...

iamh2o avatar iamh2o

Enable Running Cromwell and WDL

There is already a proof of concept working which allows running Cromwell and WDL's. This is very exploratory and needs further integration and testing.

iamh2o avatar iamh2o

new-feature
v8

Move to using snakemake v8 from v7

Refactor current daylily to use snakemake v8.

iamh2o avatar iamh2o

refactor
v8

← Metadata

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verified publisher icon Daylily-Informatics

Metadata

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....

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