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Liting Chen

[enformer] enformer-training.ipynb failed to get dataset

Also for the section "Score variants in a VCF file" in the enformer-usage.ipynb, this line also fails with similar problem: `enformer_score_variants = EnformerScoreVariantsPCANormalized(model_path, transform_path, num_top_features=20)` The error message: 2021-11-12 14:28:55.158094:...

[enformer] enformer-training.ipynb failed to get dataset

In short, To access files on gs://, I need some kind of certification. I do not have a SSL CAfile at this path: /etc/ssl/certs/ca-certificates.crt Do you know how I can...

[Question] GTDB plus NCBI kraken2 database building using GTDB grafted NCBI taxonomy

Hi Shenwei, Great documentation! Thank you for your time! I have 2 related questions: 1. I did not completely describe my question. We also like to integrate human, plasmid, and...