zy-fang

In the code comment, it says that the learning rate of the pre-trained autoencoder decays from 0.01, but the actual code decays from 1. Can I know which learning rate...

Runharmony with R and run_harmony with Python produced different results

1

Hi! Thank you for porting harmony into python -- it's very useful. I found that Runharmony with R and run_harmony with Python produced different results using the same principal component...

Hi yeye, I am interested in your method CCST. It is a nice method for analyzing spatial transcriptomics! I tried to cluster DLPFC samples with CCST. I did not find...

Some question about data augmentation

2

Hi,  When you get the dataset, it looks like you've done the transformation in your code, but then you do the transformation again in the End2EndDataset. Do I need...

Hi, I am unable to import the name 'MRVI' from 'scvi.external'. I am currently using scvi version 1.1.2. I found that the mrVI tutorial (https://docs.scvi-tools.org/en/latest/tutorials/notebooks/scrna/MrVI_tutorial.html) uses scvi version 1.1.3. However,...