xczhang

Hi， I encountered the same error. I checked the log and found the following error. I have tried to replace different versions of tophat2, but it still hasn't been solved...

The problem has been solved and can be run according to this version of the software ``` tophat2：tophat-2.0.12.Linux_x86_64---------------------http://ccb.jhu.edu/software/tophat/downloads/ samtools：0.1.18.0------------------------- bowtie：1.0.0.0--------------------------https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.0/bowtie-1.0.0-linux-x86_64.zip/download ```

Maybe you can try another GTF file，I've met the same thing.

The question to me.