GSEApy
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Gene Set Enrichment Analysis in Python
I have a significant GO terms from pre rank model and the plot shows that the line representing running enrichment score is mostly with negative score and the peak is...
Hi, thank you so much for your charming implementation. I saw in your GitHub issue responses that ssgsea couldn't obtain correct p-values and FDRs, but that was in 2019. Has...
Thank you so much for the great implementation, I just have a couple of questions here. If I use the standard gp.gsea function on my data (merged single cell dataset),...
### Setup I am reporting a problem with GSEApy version, Python version, and operating system as follows: ```python import sys; print(sys.version) import platform; print(platform.python_implementation()); print(platform.platform()) 3.11.4 | packaged by conda-forge...
Also requested here https://github.com/MaayanLab/blitzgsea/issues/7 ___ > Is there any chance that you can implement DGSEA in python as part of your package? > https://academic.oup.com/bioinformatics/article/36/21/5247/5874441 > https://jamesjoly.github.io/DGSEA/about/ > https://github.com/JamesJoly/DGSEA (developed by...
I am using EnrichR API on gseapy package. The GO terms obtained in the dotplot are synonyms (includes the parent and daughter terms for the same biological process). It would...
Hello! Thank you for this great tool. I am reporting a problem with GSEApy version 1.1.3, Python version 3.8.16, and operating system as follows: ``` 3.8.16 | packaged by conda-forge...
### Setup I am reporting a problem with gseapy == 1.1.2, Python == 3.8.19, and operatingsystem == Ubuntu 20 My code as follows, the goal is to have gseapy complete...
### ERROR:AttributeError: 'DataFrame' object has no attribute 'append' I am reporting a problem with GSEApy==1.1.2, Pandas==2.1.4 , and Python==3.11.6 system as follows: I use the code as follow: `result =...
