zmiimz

Conflict on daemon.json from nvidia-docker2 and docker

5

If I understand this correctly the user has to decide which daemon.json config file to use/overwrite, but this should be either mentioned somewhere in the installation guide on the page...

link from config.py fns[('hg38', 'raw')] = [ ('raw_refseq', 'hg38.refseq.gff.gz', 'ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh38.p12_top_level.gff3.gz'), is already in archive ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/ARCHIVE/ANNOTATION_RELEASE.109/GFF/ref_GRCh38.p12_top_level.gff3.gz m.b. it is would be better or useful to add some generic download links for...

I would like to have some (semi-official) translation table of TransVar annotated variant_class into MAF(Mutation Annotation Format) class. Could you consider to _correct or/and add_ this preliminary info into TransVar...

split only once, if dir also contains "=" sign.

Please provide a citation recommendation in the README file.

foxy_xml_tag.f90 produces ICE in gfortran >9.2

1

Compiling foxy_xml_tag.f90 gives ICE in gfortran >9.2 f951: internal compiler error: in generate_finalization_wrapper, at fortran/class.c:2009 Please submit a full bug report, with preprocessed source if appropriate. make[1]: *** [makefile.foxy:38: static/obj/foxy_xml_tag.o]...

> import vcf > vcf_reader = vcf.Reader(open('vcf/test/example-4.2.vcf', 'r')) > for record in vcf_reader: > ... print record > File "", line 2 > print record > ^ > IndentationError: Missing...

Error log in the journal recently: > pcXXXXX /usr/local/bin/deswappify_auto.py[57055]: [ERROR] Application triggered possible bug. Please report back the following information so it can be fixed. > Traceback (most recent call...