Zach McKenzie
Zach McKenzie
We are going from intan's `.rhd` to `recording.dat`. The code for that: is https://github.com/SpikeInterface/spikeinterface/blob/52617ee93d532f8e8a6b4a675a7f4c1cca304873/src/spikeinterface/sorters/external/kilosortbase.py#L129-L160 this should then just write the binary recording. We tried it once (n_jobs=1), it was a...
This all makes sense to me. The logic is pretty sound to make the base postprocessing feature not rely on waveform extraction. And I think it will be way less...
@Gfernandezv, A lot of the sorters don't play well with 3D probes in general. So typically the field uses planar probes where you have laterality on the x and depth...
Yeah that could work. The other option would be to just use the `run_sorter_by_property` function which allows you to sort each "probe" that you've generate separately. But your strategy was...
Yes it is compatible. My only warning is that Kilosort in general hasn't always performed the best with low channel count probes [their biorxiv](https://www.biorxiv.org/content/10.1101/2023.01.07.523036v1) so for low channel count they...
I just want to say based on my struggle helping in #1338 this is again a problem of needing the right naming. In this case we looked for the dirname...
@anna-teruel, the instructions have been updated. Not sure if this will fix the M architecture issue, but the new installation instructions do not involve installing phy from pypi. Have you...
@anna-teruel, Yeah that change just happened unfortunately (Python 3.12). I'll see if I can fix the `imp` for future users, and if not I will update the yaml. Could you...
@anna-teruel, so bad news and this is what I was afraid of. openGL is deprecated on macs. I'm linking to a reddit discussion [here](https://www.reddit.com/r/opengl/comments/oc8ec1/opengl_on_mac/) So unless you're willing to try...
Yep We will probably need sample data. I always like asking if people can do a "fake" or sample data set that they just share with a dropbox or google...