dandelion
dandelion copied to clipboard
zktuong
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
### Description of the bug I am running the tutorial V(D)J analysis. When I run `ddl.tl.clone_overlap(adata, groupby="leiden", colorby="leiden", weighted_overlap=True) ` I get this error: Traceback (most recent call last): File...
add foldchange test for consensus_count (for check_contigs())
### Description of the bug When running `session_info.show()` when dandelion has been imported raises an error: ``` Cell In[2], line 2 1 #Output session Info ----> 2 session_info.show() File ~/rds/hpc-work/conda_envs/new_bio/lib/python3.11/site-packages/session_info/main.py:209,...
### Description of the issue the file formats from the Evercode TCR/BCR are a bit weird and not fully AIRR compliant. So this is the current manual workaround: ```python import...
### Description of the issue Now that mr PR at nxviz is approved - https://github.com/ericmjl/nxviz/pull/689 In theory i should be able to directly import and remove the module here?
which means i can update to use `|` for `Union` type hinting https://peps.python.org/pep-0604/