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TypeError: clone_overlap() got an unexpected keyword argument 'colorby'

Open NicolaasVanRenne opened this issue 8 months ago • 1 comments

Description of the bug

I am running the tutorial V(D)J analysis. When I run ddl.tl.clone_overlap(adata, groupby="leiden", colorby="leiden", weighted_overlap=True) I get this error: Traceback (most recent call last): File "", line 1, in TypeError: clone_overlap() got an unexpected keyword argument 'colorby'

No idea why it does not work.

I can remove the colorby by running ddl.tl.clone_overlap(adata, groupby="leiden", weighted_overlap=True)

But when I plot it, I get this lousy image:

shared_clonotype

I have no idea why this goes wrong....

Minimal reproducible example

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The error message produced by the code above

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OS information

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Version information

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Additional context

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NicolaasVanRenne avatar Jun 18 '24 09:06 NicolaasVanRenne