Zhicheng Ji comments

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                                            Zhicheng Ji

Add an option to add a heatmap legend

return mouse event to server?

GPfates bifurcation statistics on known pseudotime and posterior probabilities

I would like to know whether GPfates can identify differential genes between lineages as well.

GPfates bifurcation statistics on known pseudotime and posterior probabilities

Thank you for your response. I think this is what I meant. I wonder how to extract the differential gene results after I call m.calculate_bifurcation_statistics()?

GPfates bifurcation statistics on known pseudotime and posterior probabilities

Thank you for the helpful comment. I am able to get the likelihood ratio now. Just wondering whether it is possible to get p-values for the differential gene test as...

GPfates bifurcation statistics on known pseudotime and posterior probabilities

Thank you! One last question, is it possible to identify differential genes within one branch (i.e. genes whose expressions do not change over pseudotime)?

feather v1 or v2 for R package

You can use V1 version: https://resources.aertslab.org/cistarget/databases/old/