zhujiahua700403

I was running SURVIVOR and noticed that the sorting of its vcf files wasn't messed up in chromosome order eg： ##fileformat=VCFv4.1 ##FILTER= ##source=SURVIVOR ##fileDate=20250331 ##contig= ##contig= ##contig= ##contig= ##contig= ##contig=...

The conda version doesn't have the package I need.

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### Subject of the issue I want to use the BreakdancerToVcf package under Jvarkit, however, after downloading it I realized that this package is not in the file downloaded under...

Thank you for developing the software. I note that graphtyper2 has a series of parameters for genotyping population structural variation. I would like to know what filtering conditions are recommended....

Thank you for your contribution. If I want to use samplot-ml to detect SV in pigs, do I need to re-model？and if so, how do I go about it？