Henan Zhu comments

Repositories
Issues
Comments

Results 3 comments of


                                            Henan Zhu

Call function return infinite number without log2 and abs CN.

Hi @tetedange13, Thank you for the investigation. I used "batch" method to generate cnr file. When I checked the cnr file, only antitarget regions didn't have weight values. This also...

Call function return infinite number without log2 and abs CN.

Hi @tetedange13, I figure out why my antitarget regions only showed 0 in all cnr file. Somehow, my pipeline only printed reads in the target regions into the bam file...

Call function return infinite number without log2 and abs CN.

Hi @tetedange13, Sorry for the late reply. I just finished the rerun of all my bam files. Now I have proper CNVkit results. I used GATK best practices pipeline for...