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pyscenic ctx Error: pandas.errors.ParserError: Could not construct index. Requested to use 2 number of columns, but 3 left to parse

2

Hello pyscenic team, I am experiencing an error while running pyscenic ctx: 'pandas.errors.ParserError: Could not construct index. Requested to use 2 number of columns, but 3 left to parse.' The...

Gene regulatory network construction，the required file cannot be downloaded。

1

The required cisTarget databases and scripts to construct gene regulatory network can be downloaded [here](https:// figshare.com/articles/dataset/Auxiliary_data_and_codes_for_scPlant/23498402)，but the file under that URL doesn't seem to be downloadable。

Error occurred after Integration of batches.

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I encountered a strange situation, after the integration of batches., the cNMF result file cNMF.usages.k_28.dt_2_0.consensus.txt is blank. Other result files, such as cNMF.gene_spectra_score.k_28.dt_2_0.txt, are normal, and do not experience any...