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                                            zhenjiagan

2.1.0 TypeError: Attention.forward() got an unexpected keyword argument 'biases'

Hi, I used 2.1.1 and ran the following YAML file with the same error `TypeError: Attention.forward() got an unexpected keyword argument 'biases'` YAML: ``` version: 1 # Optional, defaults to...

Missing `example_seqs.fasta` file in the Colab example

I also encountered this problem. When I run: _wget -nc -P protT5/ https://rostlab.org/~deepppi/example_seqs.fasta_, it prompts: _Connecting to files.rostlab.org (files.rostlab.org)|131.159.28.73|:443... failed: Connection timed out. Retrying._

Unable to download or access ccd.pkl, resulting in Boltz predictions not working

Hi, Did you install colabfold and mmseq2 like this? It is a reference to the method in Protenix. colabfold can be installed with: `pip install colabfold[alphafold].` Build MMseqs2 from source:...