zhengjiantao

RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281

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When I run miso, I encountered an error as stated in the topic. Please help me, thanks advanced!

About testing error

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I have installed MISO. And all dependence is ok. But I got an error when MISO test. The code shown below: python -m unittest discover misopy The errors shown below(Maybe...

About what kma can do?

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I have one guess whether kma detect IR in one sample? For example: I have four sample 1.xprs, 2.xprs, 3.xprs, 4.xprs If I can use kma to analysis IR for...

Error in generate_introns.py.

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when I run this command : python $PRE/generate_introns.py --genome $path_fa --gtf $path_gtf --extend 25 --out results/kma I got the following error: Traceback (most recent call last): File "/home/zhengjt/R/x86_64-pc-linux-gnu-library/3.4/kma/pre-process/generate_introns.py", line 154,...

I want to know what does means "N is the number of bases bases to overlap into the intron. Note, this should be at most read_length - 1, but we...