EToKi
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Error when running example script EToKi.py MLSTdb
Hello, I installed EToKi and tried the example as showed in the README file but I got the following error.
./EToKi.py MLSTdb -i examples/Escherichia.Achtman.alleles.fasta -r examples/Escherichia.Achtman.references.fasta -d examples/Escherichia.Achtman.convert.tab
2020-07-29 20:45:04.997470 Exemplar sequences in ./NS_2085r4ap/clsFna.clust.exemplar
2020-07-29 20:45:04.997569 Clusters in ./NS_2085r4ap/clsFna.clust.tab
2020-07-29 20:45:05.030599 Run BLASTn starts
2020-07-29 20:45:05.384751 Run BLASTn finishes. Got 971 alignments
2020-07-29 20:45:05.384888 Run diamond starts
2020-07-29 20:45:06.047658 Run diamond finishes. Got 966 alignments
2020-07-29 20:45:06.375628 removed 0 paralogous sites.
2020-07-29 20:45:06.375682 obtained 5530 alleles and 39 references alleles
2020-07-29 20:45:06.378881 A file of reference alleles has been generated: examples/Escherichia.Achtman.references.fasta
Traceback (most recent call last):
File "EToKi.py", line 47, in
I installed in a conda env with python 3.6. Some ideas how to fix it?