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conflicts between gggenomes and gggenes

1

Hi, The following 2 commands work well when I only install gggenes, but after installed the gggenomes, the command didn't work and get errors: p

Segmentation fault (core dumped) when ffindex_from_fasta

5

Hi, ffindex_from_fasta broken off because of the following error, the output looks like imcomplete, anyone konw the reason and solution: $ffindex_from_fasta -s segment_fas.ff{data,index} combine.segment.faa data file: segment_fas.ffdata index file: segment_fas.ffindex...

no bin directory generated when compile from source code

1

No bin directory generated when compile from source code following the intrduciton from wiki, but the ffindex* binaries are in the directory ./build/lib/ffindex/src/, and other other binaries such as hhblits_mpi...

the query is multiple different sequence

1

my query is multiple different protein, if it could be as the input directly for hhblits, or must I split them into many files with each sequence in it

conflicts between gggenomes and gggenes

1

Hi, The following 2 commands work well when I only install gggenes, but after installed the gggenomes, the command didn't work and get errors: > p p+geom_gene_arrow(arrow_body_height = unit(10, "mm"),arrowhead_height...

Subject super kingdoms is "0"

2

Hi, I have some quesionts about the "subject super kindoms " when specify the -outfmt "6 ... sskingdoms", the following are the type of sskingdoms in my output, what's the...

Why completely identical sequence are assigned to different group by Roary?

1

Hi, Why completely identical sequence are assigned to different group by Roary? Anybody could give me a help? Thanks in advance.

Hi, 1. I assembly contig by Flye and the result file could tell me which contig is circular. 2. Then I do some polishes by racon+medaka+pilon, and get different contigs...

Should we do polish（racon+pilon） or circlator first，any suggestion?

@tseemann Hi Torsten Seemann, Thank you very much for your wonderful Prokka, I used it to annotation my bacteria before, now I would like to use it on my metatranscriptome...