bindash

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Just to take a note here that we can have faster popcount than the scalar popcount from GCC compiler: http://0x80.pl/notesen/2019-01-29-simd-count-byte.html#gcc-vectorization We may need to do it to have SIMD version,...

jianshu93

How to filter low quality Kmers in raw fastq file

1

Hi, Dr Zhao: Does bindash have option to filter out low coverage or low quality Kmers in fastq file? I believe these Kmers will bias distance estimation Many thanks

yhg926

The input data format

1

Hi, I tried to use bindash to process my fasta data. I first used the following command: ./bindash sketch mydata.fas --outfname=genomeA.sketch The mydata.fas file size is about 50M, containing more...

bingyinglee

BinDash 2.0 usage and build?

2

Thanks for your work on BinDash! I am interested in using BinDash2.0 as a replacement for Mash. Is there a particular commit I should build to try it? If it...

jdwinkler

Wrong bioconda link in README

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Currently the "install with bioconda" icon in the README links to http://bioconda.github.io/recipes/gsearch/README.html rather than http://bioconda.github.io/recipes/bindash/README.html

peterjc