zhanxw

Will add support for csi index.

Can you recode the covariate file and imputed the missing covariates?Sent from my iPhoneOn Feb 6, 2023, at 2:26 PM, katyaorlova ***@***.***> wrote: Thank you for creating and maintaining this...

This issue is likely caused by invalid taxa names. For example, if the "Species" is unknown is the `tax_table(ps)`, put `NA` there. This resolved our problem.

@garyzhubc What is the version of your PLINK2?

@dajiang Do we have this file: ukb_imp_chr1_v3.bgen ? On Mon, Feb 8, 2021 at 12:30 PM Peiyuan Zhu wrote: > Why is it that the dimension increased after pruning? >...

Sorry that I cannot replicate this error on my end. Ubuntu: Ubuntu 20.04.3 LTS GCC: 11.2.0 Maybe you can try to manually modify CFLAGS or CXXFLAGS?

That’s all very helpful suggestions. Thanks and I will implement those. Sent from my iPhone > On Jul 28, 2020, at 3:56 PM, Wenjian Bi wrote: > >  >...

Thanks for the suggestion, but managing rsid is quite challenging as they can change over time (rs ids can merge or becomes invalid across releases). Sent from my iPhone >...

If a genotype is missing in BGEN, you will get NA as the genotype. Best, Xiaowei On Thu, Feb 11, 2021 at 8:07 PM Peiyuan Zhu wrote: > Missing data...

That’s because tabix is build upon the latest htslib which is not incorporated/implemented in seqminer yet. I have several deadlines and cannot implement it right now. Sorry about that. Sent...