yimin zhang

I have met with the same problem with the following command: cnvkit.py batch S117.chr1.bam --normal S117F.chr1.bam \ --targets Genome.bed --annotate refFlat.txt \ --fasta hg19.fa --access Genome.bed \ --output-reference my_reference.cnn --output-dir...

I noticed that it was segmenting problem, so I specified "--segment-method hmm" instead of using the default method "cbs" and ran the batch command successfully. The cbs method depends on...