zhangws119

cannot run PhyloPhlAn with supermatrix_nt.cfg

1

PhyloPhlAn version 3.0.60 (27 November 2020) Command line: /home/geobig/User/Softwares/Anaconda3/envs/phylophlan/bin/phylophlan -i 0_selected_genomes/ -d /home/geobig/Users/Liuli/phylophlan_databases/ -f phylophlan/supermatrix_nt.cfg -o 2_phylophlan --nproc 20 --diversity low --accurate --verbose Automatically setting "database=phylophlan_databases" and "databases_folder=/home/geobig/Users/Liuli" Automatically setting...

-bash: initPipeline: command not found

4

Dear metAMOS developers, I am having an error about "initpipeline" I hope you can help me finding the solution. Thank you for your attention James Version as follows：drwxr-xr-x. 3 root...