zhanglab2008

Agreed. i also want to test a loom file. I used my loom file and it doesn't work. Can you provide one as an example?

It’s because apple is not using nvidia gpu.

I brought up this thread since I also have the same question. A lot of people only make RPKM count matrices available to download from GEO so it will be...

I came across the same issue when I limited the source and target to 1 cell type. Do you have a quick fix, Jin? I will look at your source...

May not be an ideal solution but I returned the data frame and reploted it with ggplot. I just have one more question: Why the p value column is greater...

there is a discussion here as well. https://github.com/theislab/scvelo/issues/118

> > Hi @VPetukhov I wonder how to plot the cells (in polygon shapes) in the 2D tissue dimension after I finished clustering and cell type annotation. I saw that...

> > Hi! > > I was wondering if you are working on/thinking about upgrading the package to dependencies with Python 3.7 and higher versions of scanpy? Right now, your...

same issue for me

I have the same issue when I tried to show the cell types of interest but not all cell types. Here is the error: ```R Error in quantile.default(abs(net), probs =...