Zhaleh Safikhani

Seurat objects

1

Is it possible to cluster cells in seurat data object (count data) with scVAE? Is it possible to apply it on scaled data? Like if cell types are already regressed...

I ran mRMR.ensembl in parallel on a number of cores of a machine for several rounds. It seems that it works fine for the first round but after that the...

It seems that mRMR.ensembl has some issue with the indices. I have an input file with 19k features and I use mRMR.ensembl to give me a solution with 100 features...

summarizeSensitivityProfiles, summary.stat

2

We need to add another option (like "all") to summary.stat parameter in case the user needs to have the sensitivity profile matrix of all the replicates.