zgb963 comments

Results 4 comments of


                                            zgb963

Problems with running Liftoff on HPC environment

> I also encountered this problem, have you solved it? @yeeus not yet, I heard from someone that liftoff needs to be run with a gtf file and not a...

Liftoff pip install fails

Hi, I was having the same issue with installing Liftoff with conda, source, and pip in HPC environment. Creating a conda env and installing from bioconda & conda-forge worked for...

GFF does not contain any gene features. Use -f to provide a list of other feature types to lift over.

> Hi, > > I think that you need to try > > `liftoff -g liftoff/hg38.ncbiRefSeq.gtf -p 10 -o liftoff/update_rhemac10_lifted.gtf liftoff/rheMac10.fa liftoff/hg38.fa` > > or > > ``` > liftoff...

Change orig.ident column in seurat meta.data to match cell barcode sample prefixes

> Hi - you can rename/add new metadata columns to your Seurat object very easily by creating a column of labels based on the sample name assuming you want to...