Zev Kronenberg

capturing deletions

6

Greetings, I've noticed that alignments break over small deletions. Is there a way to control the size of deletion an alignment can contain? Thank you, Zev

Dear Heng, Please consider this pull request which adds chaining, layout, and plotting for minimap output. The code is not linked into your Makefile, therefore bugs are completely isolated. This...

Heng, I'm trying to extract syntenic blocks from the mimi-map output. Are the records ordered by the chain they are in? Do you have any suggestions as to the best...

translocation test cases

10

@abolia @BrettKennedy @ryanabo, I'm very close to adding translocation support to WHAM-GRAPHENING. I'm trying to round up some test cases in BAM format. Do you have any to share?

Can we add a random function for ethnicities and the number of samples.

Hi @HopedWall, I'm running the tool, and getting a VCF file that contains a header, but no variants were called. The graph was generated by the latest version of `minigraph`....